The research specifically explores the influence of genomic inbreeding levels on late-term pregnancy loss in horses. These findings provide valuable insights for breeding practices, which can help inform mating decisions to reduce the risk of miscarriages in Thoroughbreds.
Inbreeding, the mating of related individuals, is a common practice in the livestock industry and can be beneficial in controlled breeding programs for consolidating desirable traits within a population. However, excessive inbreeding heightens the likelihood of producing offspring with harmful homozygous recessive genotypes. This can lead to genetic disorders, reduced fertility, and decreased overall population fitness.
Approximately five to ten percent of equine pregnancies result in early pregnancy loss (EPL), while seven percent are lost between Day 70 of gestation and 24 hours postpartum (MLPL). Despite this, prior to this study, there had been no genomic analysis of the correlation between inbreeding levels and pregnancy loss in horses.
Led by Dr. Jessica Lawson, Alborada Trust Research Fellow at the RVC, and Professor de Mestre at the Baker Institute for Animal Health at Cornell University, along with former RVC PhD student Dr. Charlotte Shilton, the research team analysed DNA samples from 189 individuals. These samples included allantochorion and foetal DNA from early pregnancy loss (EPL) cases (n=37, gestation age 14–65 days), mid and late-term pregnancy loss (MLPL) cases (n=94, gestational age 70 days–24 hours post parturition), and hair or blood samples from adult UK Thoroughbred controls (n=58).
The study revealed that Thoroughbred pregnancies lost in mid and late gestation (MLPL) had significantly higher inbreeding metrics compared to UK Thoroughbred adult controls. Conversely, pregnancies lost early in gestation (EPLs) showed no significant difference in inbreeding metrics compared to controls.
These findings emphasise the importance of informed mating decisions in the Thoroughbred breeding industry. Moreover, they stress the need for further research to identify and characterise genomic changes that may prove detrimental to pregnancy.
Dr Jessica Lawson, Alborada Trust Research Fellow at the RVC, said: “This research provides critical evidence showing that mating highly related individuals does have a tangible effect on our breeding operations, as there is a real risk of a mare losing her pregnancy late in gestation and failing to produce a foal at all that season.
“The take home from our work should be to carefully consider breeding choices that involve mating of highly related individuals as, ultimately, this may increase the chance of the foal inheriting mutations which may not be compatible with life. We are already working on the next step, looking to identify these changes so more specific advice can be provided in the future”.
This research was funded by the Thoroughbred Breeders Association, Horserace Betting Levy Board, the Alborada Trust, and partial PhD studentship funding from the Royal Veterinary College's Paul Mellon Trust for Equine Research.
For more details, see:
Lawson JM, Shilton CA, Lindsay-McGee V, Psifidi A, Wathes DC, Raudsepp T, de Mestre, AM.
Does inbreeding contribute to pregnancy loss in Thoroughbred horses?
Equine Vet J. 2024.
https://doi.org/10.1111/evj.14057
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